Stem-loop osa-MIR11338

Accession

MI0036489

Description

Oryza sativa osa-MIR11338 precursor miRNA

Sequence

80379 reads, 374.0 reads per million, 142 experiments

uugcuauUUAGGAUUAUUAAACGUAGAUUaucgacaaaaccgauucuauaacccuuagccuauuuugugagacgaaucuaaugauauauauuaauccauaauuagcggcugauuacuguagcauuacuguagcaaaucauggauuaauauaucucguuagAUUCGUCUCGCAAAAUAGCCUAGGaguuauggaaugaguuuugucaguaaucuacguuuaauacucuuaaauagcaa
.((((((((((((.(((((((((((((((((.((((((((..((((((((((.(((((.(((((((((((((((((((((((((.((((((((((((((.(((.((.......(((.(((....))).))))).))).)))))))))))))).))))))))))))))))))))))))).))))).))))))))))..)))))))).))))))))))))))))).)))))))))))).

Structure

u            U                 c        cg          c     c                         u              a   a  ggcugau   u   g 
 ugcuauUUAGGA UAUUAAACGUAGAUUau gacaaaac  auucuauaac cuuag cuauuuugugagacgaaucuaauga auauauuaauccau auu gc       uac gua c
 |||||||||||| ||||||||||||||||| ||||||||  |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| ||| ||       ||| |||  
 acgauaaauucu auaauuugcaucuaaug cuguuuug  uaagguauug GGAUC GAUAAAACGCUCUGCUUAgauugcu uauauaauuaggua uaa cg       aug cau a
a            c                 a        ag          a     C                         c              c   a  -------   u   u 

Annotation confidence Low

Genome context

2: 34890451-34890687 [+]

Mature osa-miR11338-5p

• Accession: MIMAT0044630
• Description: Oryza sativa osa-miR11338-5p mature miRNA
• Sequence: 8 - UUAGGAUUAUUAAACGUAGAUU - 29
• Evidence: experimental ; Illumina [1]

Mature osa-miR11338-3p

• Accession: MIMAT0044631
• Description: Oryza sativa osa-miR11338-3p mature miRNA
• Sequence: 161 - AUUCGUCUCGCAAAAUAGCCUAGG - 184
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26083154
   MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors
   "Baldrich P, Campo S, Wu MT, Liu TT, Hsing YI, San Segundo B"
   "RNA Biol (2015) 12:847-863