Stem-loop mdm-MIR169o

Accession

MI0035683

Description

Malus domestica mdm-MIR169o precursor miRNA

Literature search

4 open access papers mention mdm-MIR169o
(9 sentences)

Sequence

3281 reads, 212.0 reads per million, 28 experiments

uaaaauucagaggaagagaagucuuguaugaaggugaagagccauguuuggUAGCCAGGGAUGACUUGCCUaauuagaucucauaugugcaaaaguuacugacaaguuaacgcuugagccuauauauauuaggauuucuagruaagcaaguuguccuucggcuugucugacuggcucuuaucuuucaugCUAGACUUUCCUCUCUUCCAUGCAU
...........(((((((((((((.(((((((((..((((((((.(((.((.(((((((((((((((((.((.((((((((.((((((((((..((((((....)).))))..)))......))))))).)))...))))).)).))))))))))))).))))..)).)))))))))))..))))))))).)))))....))))))))......

Structure

uaaaauucaga        ----     u         ug        u   u  -U    -             C  a     ---   c       ------   aa    -  g 
           ggaagaga    agucu guaugaagg  aagagcca guu gg  AGCC AGGGAUGACUUGC Ua uuaga   ucu auaugug      caa  guua cu a
           ||||||||    ||||| |||||||||  |||||||| ||| ||  |||| ||||||||||||| || |||||   ||| |||||||      |||  |||| ||  
           CCUUCUCU    UCAGA Cguacuuuc  uucucggu cag cu  ucgg uuccuguugaacg au gaucu   gga uauauau      guu  caau ga c
-----UACGUA        CCUU     U         ua        -   u  gu    c             a  r     uua   u       auccga   cg    u  a 

Annotation confidence Not enough data

Genome context

MDC015971.68: 4397-4610 [+]

Mature mdm-miR169o-5p

• Accession: MIMAT0043632
• Description: Malus domestica mdm-miR169o-5p mature miRNA
• Sequence: 52 - UAGCCAGGGAUGACUUGCCU - 71
• Evidence: experimental ; Illumina [1]

Mature mdm-miR169o-3p

• Accession: MIMAT0056824
• Description: Malus domestica mdm-miR169o-3p mature miRNA
• Sequence: 190 - CUAGACUUUCCUCUCUUCCAUGCAU - 214
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812