Stem-loop mdm-MIR395l

Accession

MI0035677

Description

Malus domestica mdm-MIR395l precursor miRNA

Literature search

5 open access papers mention mdm-MIR395l
(50 sentences)

Sequence

38852 reads, 2564.0 reads per million, 32 experiments

auaacaucagacggccccuaguGUUCCCUCAAACACCUCAUUGgaaauuaauagggaguccuaaguaauccaucucucucucucucccucucuuuaCUGAAGUGUUUGGGGGAACCCcuggagccauuugauccau
.....((((((.(((.((..(.((((((((((((((.(((.((((.......((((((.........................))))))...)))).))).)))))))))))))).)..)).))).))))))....

Structure

auaac      c   c  ua u              C   U    aauuaau      uccuaaguaau 
     aucaga ggc cc  g GUUCCCUCAAACAC UCA UGga       agggag           c
     |||||| ||| ||  | |||||||||||||| ||| ||||       ||||||           c
     uaguuu ccg gg  C CAAGGGGGUUUGUG AGU auuu       ucccuc           a
-uacc      a   a  uc C              A   C    ----cuc      ucucucucucu 

Annotation confidence High

Genome context

MDC003768.152: 35976-36111 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdm-MIR395l

Mature mdm-miR395l-5p

• Accession: MIMAT0056819
• Description: Malus domestica mdm-miR395l-5p mature miRNA
• Sequence: 23 - GUUCCCUCAAACACCUCAUUG - 43
• Evidence: experimental ; unknown

Mature mdm-miR395l-3p

• Accession: MIMAT0043626
• Description: Malus domestica mdm-miR395l-3p mature miRNA
• Sequence: 97 - CUGAAGUGUUUGGGGGAACCC - 117
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812