miRBase entry: mdm-MIR11015

Stem-loop mdm-MIR11015


Accession
MI0035675
Description
Malus domestica mdm-MIR11015 precursor miRNA


Sequence

5578 reads, 430.0 reads per million, 29 experiments
auauauuuuuuuuuucuuaaugggucauAACGAGUCGGGUCAUUUUacuuguUGGGUAAAAUGACCCAACCUGuuaagaaccgguuaagauaauggguguga
.(((((((......(((((((.((((.(((((.((.((((((((((((((...)))))))))))))).)).))))).).))).)))))))....))))))).

Structure
a       uuuuuu       g   - a     A  C              g 
 uauauuu      ucuuaau ggu c uAACG GU GGGUCAUUUUacuu  
 |||||||      ||||||| ||| | ||||| || |||||||||||||| u
 guguggg      agaauug cca g auuGU CA CCCAGUAAAAUGGG  
a       --uaau       g   a a     C  A              U 


Annotation confidence Medium
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Genome context
MDC006414.458: 15258-15359 [+]

Database links

Mature mdm-miR11015-5p

Accession MIMAT0056817
Description Malus domestica mdm-miR11015-5p mature miRNA
Sequence 29 - AACGAGUCGGGUCAUUUU - 46
Evidence experimental
unknown

Mature mdm-miR11015-3p

Accession MIMAT0043624
Description Malus domestica mdm-miR11015-3p mature miRNA
Sequence 53 - UGGGUAAAAUGACCCAACCUG - 73
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812