Stem-loop mdm-MIR11013

Accession

MI0035672

Description

Malus domestica mdm-MIR11013 precursor miRNA

Sequence

2965 reads, 240.0 reads per million, 31 experiments

uuuuaccaauguccuuuagcaguuucccaaagaaaaaaaaacauagaaacuaacuuuuaaauucaugauaucaguaaguaaagaaaacaaaaacuucaauaCAUGGGAAUUUUAAAGUCACCUcuugaaauuuuuguuguaaguaucacgaaauacagcgaccauguauccaccggcaaaaauuucaagagguaacuuuaaaauucccauguauugaaguuuuuuuuucuuuacuaacugauaucaugaauuuaaaaguuaguuucuauauuuuuuuuUUGGGAAACUGCAAAAGGACAUugguaaaaaaa
(((((((((((((((((.((((((((((((((((((((....(((((((((((((((((((((((((((((((((.(((((((((((.((((((((((((((((((((((((((((((.((((((((((((((((((((.............(((((.......)))))....)))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))).)))))))))))))))))))).)))))))))))))))))...

Structure

---                 a                    aaac                                 a           c                              C                    uaaguaucacgaa     gc 
   uuuuaccaauguccuuu gcaguuucccaaagaaaaaa    auagaaacuaacuuuuaaauucaugauaucagu aguaaagaaaa aaaaacuucaauaCAUGGGAAUUUUAAAGU ACCUcuugaaauuuuuguug             auaca  g
   ||||||||||||||||| ||||||||||||||||||||    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||             |||||  a
   aaaaugguUACAGGAAA CGUCAAAGGGUUuuuuuuuu    uaucuuugauugaaaauuuaaguacuauaguca ucauuucuuuu uuuuugaaguuauguacccuuaaaauuuca uggagaacuuuaaaaacggc             uaugu  c
aaa                 A                    ---a                                 a           -                              a                    ---------cacc     ac 

Annotation confidence Low

Genome context

MDC021610.17: 9505-9815 [-]

Mature mdm-miR11013-5p

• Accession: MIMAT0043621
• Description: Malus domestica mdm-miR11013-5p mature miRNA
• Sequence: 102 - CAUGGGAAUUUUAAAGUCACCU - 123
• Evidence: experimental ; Illumina [1]

Mature mdm-miR11013-3p

• Accession: MIMAT0056814
• Description: Malus domestica mdm-miR11013-3p mature miRNA
• Sequence: 279 - UUGGGAAACUGCAAAAGGACAU - 300
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812