miRBase entry: mdm-MIR11010

Stem-loop mdm-MIR11010


Accession
MI0035663
Description
Malus domestica mdm-MIR11010 precursor miRNA


Sequence

41133 reads, 2543.0 reads per million, 27 experiments
guCGAGGAUGUAGAAAAGAGCUGGgaguuguucugcaaugAGUAACUAUAGCUGUUUUCUAcyuauuuau
.........((((((((.(((((..((((((((......)))))))).))))).))))))))........

Structure
guCGAGGAU        G     Gg        ug 
         GUAGAAAA AGCUG  aguuguuc  c
         |||||||| |||||  ||||||||   
         cAUCUUUU UCGAU  UCAAUGAg  a
-uauuuauy        G     -A        ua 


Annotation confidence Medium
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Genome context
MDC005296.140: 6631-6700 [-]

Database links

Mature mdm-miR11010-5p

Accession MIMAT0056806
Description Malus domestica mdm-miR11010-5p mature miRNA
Sequence 3 - CGAGGAUGUAGAAAAGAGCUGG - 24
Evidence experimental
unknown

Mature mdm-miR11010-3p

Accession MIMAT0043612
Description Malus domestica mdm-miR11010-3p mature miRNA
Sequence 41 - AGUAACUAUAGCUGUUUUCUA - 61
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812