Stem-loop mdm-MIR11008

Accession

MI0035660

Description

Malus domestica mdm-MIR11008 precursor miRNA

Sequence

12885 reads, 814.0 reads per million, 30 experiments

caaauuagacuuggcuucucugcccucccacuuuucacacacucacauccucuccuAUUUGUGCGGUCACGGUUAAaucauguuaacauuuuauauugcuauuguuuuuugucuuauuaucucuauaaaaaaaauuaauauaaaauauuaacguggcuuaacuGUGACCGCACAAAAUAGAAGAgaauggaaguguaugggaagugggagggcagagaagccugaucccacaa
.......((...(((((((((((((((((((((((((.(((((..(((.((((.((((((((((((((((((((((.(((((((((.(((((((((((..(((.((((((((............)))))))))))))))))))))).))))))))).)))))))))))))))).)))))).)))).)))..))))).)))))))))))))))))))))))))...))......

Structure

caaauua  cuu                         c     ca   c    c      -                a         c           cu   g        cuuau 
       ga   ggcuucucugcccucccacuuuuca acacu  cau cucu cuAUUU GUGCGGUCACGGUUAA ucauguuaa auuuuauauug  auu uuuuuugu     u
       ||   ||||||||||||||||||||||||| |||||  ||| |||| |||||| |||||||||||||||| ||||||||| |||||||||||  ||| ||||||||      
       cu   ccgaagagacgggagggugaagggu uguga  gua gAGA GAUAAA CACGCCAGUGucaauu ggugcaauu uaaaauauaau  uaa aaaaaaua     a
-aacacc  agu                         a     ag   a    A      A                c         a           --   -        ucucu 

Annotation confidence Low

Genome context

MDC006630.345: 26791-27023 [+]

Mature mdm-miR11008-5p

• Accession: MIMAT0056805
• Description: Malus domestica mdm-miR11008-5p mature miRNA
• Sequence: 57 - AUUUGUGCGGUCACGGUUAA - 76
• Evidence: experimental ; unknown

Mature mdm-miR11008-3p

• Accession: MIMAT0043608
• Description: Malus domestica mdm-miR11008-3p mature miRNA
• Sequence: 164 - GUGACCGCACAAAAUAGAAGA - 184
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812