Stem-loop mdm-MIR11007

Accession

MI0035659

Description

Malus domestica mdm-MIR11007 precursor miRNA

Sequence

5978 reads, 445.0 reads per million, 28 experiments

aaucgauaaaaguagucyaugagauuguccgCCGUCAAUUAUUUUGGUACGUuaaugaaaaaucuccguuaaauugaggguauauuugucaaaucaacuccuccacuuycacugauuucyucaauuuaacgaagauuuuucacaaaaaugaccAAAAUGAUUGACGGUGGAuaaucucagagacuacuucuauuaau
....((((.((((((((..(((((((((((((((((((((((((((((.((((..((((((((((.(((((((((((.((...........(((((................))))))).))))))))))).))))))))))....)))))))))))))))))))))))))))))))))..)))))))).))))...

Structure

aauc    a        ya                             A    --aa          c           g  uauauuuguca     acuccuc 
    gaua aaguaguc  ugagauuguccgCCGUCAAUUAUUUUGGU CGUu    ugaaaaaucu cguuaaauuga gg           aauca       c
    |||| ||||||||  ||||||||||||||||||||||||||||| ||||    |||||||||| ||||||||||| ||           |||||        
    uuau uucaucag  acucuaauAGGUGGCAGUUAGUAAAAcca guaa    acuuuuuaga gcaauuuaacu cu           uuagu       a
-uaa    c        ag                             -    aaac          a           y  -----------     cacyuuc 

Annotation confidence Medium

Genome context

MDC021658.160: 16245-16441 [-]

Mature mdm-miR11007-5p

• Accession: MIMAT0043607
• Description: Malus domestica mdm-miR11007-5p mature miRNA
• Sequence: 32 - CCGUCAAUUAUUUUGGUACGU - 52
• Evidence: experimental ; Illumina [1]

Mature mdm-miR11007-3p

• Accession: MIMAT0056804
• Description: Malus domestica mdm-miR11007-3p mature miRNA
• Sequence: 154 - AAAAUGAUUGACGGUGGA - 171
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812