Stem-loop mdm-MIR171q

Accession

MI0035657

Description

Malus domestica mdm-MIR171q precursor miRNA

Literature search

9 open access papers mention mdm-MIR171q
(40 sentences)

Sequence

3578 reads, 400.0 reads per million, 31 experiments

agaaagagauggauugggaucaguuugaacgGGAUAUUGGUCCGGUUCAAUAagaaaacagugcucucaaagugcuugagcucggcuuuuugaUUGAGCCGUGCCAAUAUCACGUgucacuguuccucuuaucauauauccc
.......(((((...((((.((((....(((.(((((((((.(((((((((.(((((.(.(.((((...........)))).).).))))).))))))))).))))))))).)))...)))).)))).))))).........

Structure

--agaaaga     auu    u    uuga   G         C         A     a a u    ucaa 
         gaugg   ggga cagu    acg GAUAUUGGU CGGUUCAAU agaaa c g gcuc    a
         |||||   |||| ||||    ||| ||||||||| ||||||||| ||||| | | ||||    g
         cuauu   uccu guca    UGC CUAUAACCG GCCGAGUUa uuuuu g c cgag    u
cccuauaua     --c    u    -cug   A         U         g     c g u    uucg 

Annotation confidence High

Genome context

MDC008623.473: 2694-2835 [+]

Mature mdm-miR171q-5p

• Accession: MIMAT0043605
• Description: Malus domestica mdm-miR171q-5p mature miRNA
• Sequence: 32 - GGAUAUUGGUCCGGUUCAAUA - 52
• Evidence: experimental ; Illumina [1]

Mature mdm-miR171q-3p

• Accession: MIMAT0056803
• Description: Malus domestica mdm-miR171q-3p mature miRNA
• Sequence: 94 - UUGAGCCGUGCCAAUAUCACGU - 115
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812