Stem-loop mdm-MIR11000

Accession

MI0035650

Description

Malus domestica mdm-MIR11000 precursor miRNA

Sequence

1924 reads, 121.0 reads per million, 25 experiments

ugaucuauccuauuuucgauaucguugggUUUCGCCCGUUCAAUGUGUUCCAAAGAAAUCCGGAGUaacuguggug
....((((..((((((.(((.((.(((((...(((.........))).))))).)).))).))))))...))))..

Structure

ugau    -cc      c   a  g     UUU   CCG 
    cuau   uauuuu gau uc uuggg   CGC   U
    ||||   |||||| ||| || |||||   |||   U
    ggug   aUGAGG CUA AG AACCU   GUG   C
--gu    uca      C   A  A     --U   UAA 

Annotation confidence Medium

Genome context

MDC004128.271: 8670-8745 [+]

Mature mdm-miR11000-5p

• Accession: MIMAT0056796
• Description: Malus domestica mdm-miR11000-5p mature miRNA
• Sequence: 30 - UUUCGCCCGUUCAAUGUGUUCC - 51
• Evidence: experimental ; unknown

Mature mdm-miR11000-3p

• Accession: MIMAT0043598
• Description: Malus domestica mdm-miR11000-3p mature miRNA
• Sequence: 45 - GUGUUCCAAAGAAAUCCGGAGU - 66
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812