Stem-loop mdm-MIR11002c

Accession

MI0035649

Description

Malus domestica mdm-MIR11002c precursor miRNA

Sequence

2333 reads, 200.0 reads per million, 30 experiments

caacaaccuacuccaaccacccccagucaccuccgaagcucauccucacgcaaaguuccuuuucuuuuucuaucucucuccucgagaucCUUCUCUCUUGAAUUCUUGCACUagaucgugauccauucauccaucuagucaaacaacaaauguuuuguggaguuggaaauuugagaauggaagauauagugaggaauucgauAGAGAAAGAUCUCGAGGAGAGagagaaggaacuuugcggucggugaggaugagcuucggcggugacuggggugguuggaaucuuucuua
...........((((((((((((.(((((((.((((((((((((((((((((((((((((((..........(((((((((((((((((.((((((.((((((((((.(((((.(((....(((((((.((((((((...(((((.....)))))..))))..)))).......))))))).))).))))))))))))))).)))))).)))))))))))))))))))))))))))))).....))))))))))))))))).)))))))))))))))))))..........

Structure

caacaaccuac            c       u                 -----             ucuuuuucua                 C      C          G     g   guga       ------a    --    guc     a 
           uccaaccacccc agucacc ccgaagcucauccucac     gcaaaguuccuuu          ucucucuccucgagauc UUCUCU UUGAAUUCUU CACUa auc    uccauuc       ucca  ucua   aaaca c
           |||||||||||| ||||||| |||||||||||||||||     |||||||||||||          ||||||||||||||||| |||||| |||||||||| ||||| |||    |||||||       ||||  ||||   ||||| a
           agguuggugggg ucagugg ggcuucgaguaggagug     cguuucaaggaag          agaGAGAGGAGCUCUAG AAGAGA agcuuaagga gugau uag    agguaag       aggu  aggu   uuugu a
-auucuuucua            -       c                 gcugg             ----------                 A      u          -     a   ---a       aguuuaa    ug    -gu     a 

Annotation confidence Low

Genome context

MDC010482.578: 8757-9047 [-]

Mature mdm-miR11002c-5p

• Accession: MIMAT0043596
• Description: Malus domestica mdm-miR11002c-5p mature miRNA
• Sequence: 90 - CUUCUCUCUUGAAUUCUUGCACU - 112
• Evidence: experimental ; Illumina [1]

Mature mdm-miR11002c-3p

• Accession: MIMAT0043597
• Description: Malus domestica mdm-miR11002c-3p mature miRNA
• Sequence: 203 - AGAGAAAGAUCUCGAGGAGAG - 223
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812