Stem-loop mdm-MIR319h

Accession

MI0035648

Description

Malus domestica mdm-MIR319h precursor miRNA

Literature search

4 open access papers mention mdm-MIR319h
(7 sentences)

Sequence

126838 reads, 9708.0 reads per million, 31 experiments

auauaugaaaggagcucuucuucaguccaguccuuggcaguuuaagggcuggcacucAGCUGCUGACUCGUUGGUUCAaaaacucaucauacauuugcuaaaagaagugguguuuuucugauccaacgaagcaggagccgagagguugguuauugcugucacgucUUGGACUGAAGGGAGCUCCuuaccuaua
.((((.(.((((((((((.(((((((((((..(.(((((((.....(((((((.(((.(((.(((..(((((((.(((.(((..((((((...(((....)))...))))))..))).))).)))))))..))).))).)))..)))))))...))))))).)..))))))))))))))))))))).).))))

Structure

a    u a          u           uc u       uuaag       -a   A   G   AC       U   a   cu      aca   g 
 uaua g aaggagcucu cuucaguccag  c uggcagu     ggcuggc  cuc GCU CUG  UCGUUGG UCA aaa  caucau   uuu c
 |||| | |||||||||| |||||||||||  | |||||||     |||||||  ||| ||| |||  ||||||| ||| |||  ||||||   |||  
 auau c uuCCUCGAGG GAAGUCAGGUU  g acugucg     uugguug  gag cga gac  agcaacc agu uuu  guggug   aaa u
-    c a          -           cu c       --uua       ga   c   g   ga       u   c   uu      aag   a 

Annotation confidence Low

Genome context

MDC004434.326: 8757-8949 [+]

Mature mdm-miR319h-5p

• Accession: MIMAT0043595
• Description: Malus domestica mdm-miR319h-5p mature miRNA
• Sequence: 58 - AGCUGCUGACUCGUUGGUUCA - 78
• Evidence: experimental ; Illumina [1]

Mature mdm-miR319h-3p

• Accession: MIMAT0056795
• Description: Malus domestica mdm-miR319h-3p mature miRNA
• Sequence: 166 - UUGGACUGAAGGGAGCUCC - 184
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812