miRBase entry: mdm-MIR10999b

Stem-loop mdm-MIR10999b


Accession
MI0035645
Description
Malus domestica mdm-MIR10999b precursor miRNA


Sequence

1594 reads, 117.0 reads per million, 29 experiments
auacacuauaggggcgugaUAUUCACACACCUCAUUUUACauuuuacuuuucacacaacaagagcuguguaagaaguaAAAAUGGGGUGUGUGGAUAUCACAccccuacacuaua
........((((((.(((((((((((((((((((((((......(((((((.(((((........))))).)))))))))))))))))))))))))))))).)))))).......

Structure
auacacua      c                       ACauuu       c     aca 
        uagggg gugaUAUUCACACACCUCAUUUU      uacuuuu acaca   a
        |||||| |||||||||||||||||||||||      ||||||| |||||    
        aucccc CACUAUAGGUGUGUGGGGUAAAA      augaaga ugugu   g
-auaucac      A                       ------       a     cga 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
MDC011592.184: 1253-1367 [+]

Database links

Mature mdm-miR10999b-5p

Accession MIMAT0056792
Description Malus domestica mdm-miR10999b-5p mature miRNA
Sequence 20 - UAUUCACACACCUCAUUUUAC - 40
Evidence experimental
unknown

Mature mdm-miR10999b-3p

Accession MIMAT0043592
Description Malus domestica mdm-miR10999b-3p mature miRNA
Sequence 79 - AAAAUGGGGUGUGUGGAUAUCACA - 102
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812