miRBase entry: mdm-MIR10999a

Stem-loop mdm-MIR10999a


Accession
MI0035644
Description
Malus domestica mdm-MIR10999a precursor miRNA


Sequence

5191 reads, 308.0 reads per million, 29 experiments
auacacuauaggggcgugauAUUCACACACCUCAUUUUACauuuuacuuuucacacaacaagagcuguguaagaAGUAAAAUGGGGUGUGUGGAUAUCacaccccuacacuaua
........((((((.((((((((((((((((((((((.......(((((((.(((((........))))).))))))))))))))))))))))))))))).)))))).......

Structure
auacacua      c                      UACauuu       c     aca 
        uagggg gugauAUUCACACACCUCAUUU       uacuuuu acaca   a
        |||||| ||||||||||||||||||||||       ||||||| |||||    
        aucccc caCUAUAGGUGUGUGGGGUAAA       AUGAaga ugugu   g
-auaucac      a                      -------       a     cga 


Annotation confidence Low
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Genome context
MDC011592.254: 1365-1478 [+]

Database links

Mature mdm-miR10999a-5p

Accession MIMAT0056791
Description Malus domestica mdm-miR10999a-5p mature miRNA
Sequence 21 - AUUCACACACCUCAUUUUAC - 40
Evidence experimental
unknown

Mature mdm-miR10999a-3p

Accession MIMAT0043591
Description Malus domestica mdm-miR10999a-3p mature miRNA
Sequence 75 - AGUAAAAUGGGGUGUGUGGAUAUC - 98
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812