miRBase entry: mdm-MIR10993e

Stem-loop mdm-MIR10993e


Accession
MI0035642
Description
Malus domestica mdm-MIR10993e precursor miRNA


Sequence


auucuuuauugugucuagaacauaagugguacacuaugugucguuauauuaguacaaacaucuagucauucuacagaacguuuaguuauuuaaguuguuaauuuuuuaacauucuccacuacuuauauagugACAUGUGGUGUACCAUCCUGUguucuaggcacauugaaaaa
....((((.(((((((((((((((.((((((((((((((((((((((((.((((.((((.(((.((......)))))..))))............((((((....))))))........)))).))))))))))))))))))))))))..))))))))))))))).))))...

Structure
auuc    u               -a                        u    -----------------------------------c    -a   a  ca 
    uuua ugugucuagaacaua  gugguacacuaugugucguuauau agua                                    aaac  ucu gu  u
    |||| |||||||||||||||  |||||||||||||||||||||||| ||||                                    ||||  ||| ||   
    aagu acacggaucuugUGU  UACCAUGUGGUGUACAgugauaua ucau                                    uuug  aga ca  u
-aaa    u               CC                        u    caccucuuacaauuuuuuaauuguugaauuuauuga    ca   -  uc 


Annotation confidence Low
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Genome context
MDC025339.12: 1445-1617 [+]

Database links

Mature mdm-miR10993e

Accession MIMAT0043589
Description Malus domestica mdm-miR10993e mature miRNA
Sequence 133 - ACAUGUGGUGUACCAUCCUGU - 153
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812