Stem-loop mdm-MIR395k

Accession

MI0035639

Description

Malus domestica mdm-MIR395k precursor miRNA

Literature search

5 open access papers mention mdm-MIR395k
(50 sentences)

Sequence

11260 reads, 15588.0 reads per million, 32 experiments

gagaaaaaauuaacaucagauggccucuagaGUUUCCUCAAACACUUCAUUagaaauuaauguagaguccuaauuaauucauucucucucucucucucucuCUCUCUCUCUCUCUCUACugaaaguguuugggggaacccuuggagucauuugauccauauauaaacc
..............((((((((((.(((((.((((((((((((((((((.((((.........((((..................................)))).........)))).)).)))))))))))))))).).)))))))))))))).............

Structure

gagaaaaaauuaac          c    - a                -  U    aauuaaugu    uccuaauuaauucauu 
              aucagauggc ucua g GUUUCCUCAAACACUU CA Uaga         agag                c
              |||||||||| |||| | |||||||||||||||| || ||||         ||||                 
              uaguuuacug aggu c caaggggguuugugaa gu AUCU         UCUC                u
-ccaaauauauacc          -    u c                a  C    CUCUCUCUC    ucucucucucucucuc 

Annotation confidence Low

Genome context

MDC003846.250: 8270-8437 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from mdm-MIR395k

Mature mdm-miR395k-5p

• Accession: MIMAT0043586
• Description: Malus domestica mdm-miR395k-5p mature miRNA
• Sequence: 32 - GUUUCCUCAAACACUUCAUU - 51
• Evidence: experimental ; Illumina [1]

Mature mdm-miR395k-3p

• Accession: MIMAT0056789
• Description: Malus domestica mdm-miR395k-3p mature miRNA
• Sequence: 102 - CUCUCUCUCUCUCUCUAC - 119
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812