miRBase entry: mdm-MIR10997

Stem-loop mdm-MIR10997


Accession
MI0035634
Description
Malus domestica mdm-MIR10997 precursor miRNA


Sequence

139 reads, 21.0 reads per million, 27 experiments
gauguacuuauggauguugcuUAACCUUAUUUGAUUUCACGAcauugaacugcacuuucraacascuggaaggaauacaaugccAUGAAAUCAAAUAAGGUUAAGccacauuguuggccugca
..((((((....(((((.(((((((((((((((((((((.(.(((((.....(.(((((........))))))....))))).).))))))))))))))))))))).)))))...))..))))

Structure
ga    --  uaug     u                     C A     aacug a     raa 
  ugua  cu    gaugu gcuUAACCUUAUUUGAUUUCA G cauug     c cuuuc   c
  ||||  ||    ||||| ||||||||||||||||||||| | |||||     | |||||    
  acgu  gg    uuaca cGAAUUGGAAUAAACUAAAGU c guaac     g gaagg   a
--    cc  -uug     c                     A c     -auaa -     ucs 


Annotation confidence Medium
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Genome context
MDC018695.28: 16542-16664 [-]

Database links

Mature mdm-miR10997-5p

Accession MIMAT0043581
Description Malus domestica mdm-miR10997-5p mature miRNA
Sequence 22 - UAACCUUAUUUGAUUUCACGA - 42
Evidence experimental
Illumina [1]

Mature mdm-miR10997-3p

Accession MIMAT0056784
Description Malus domestica mdm-miR10997-3p mature miRNA
Sequence 85 - AUGAAAUCAAAUAAGGUUAAG - 105
Evidence experimental
unknown

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812