Stem-loop mdm-MIR319g

Accession

MI0035623

Description

Malus domestica mdm-MIR319g precursor miRNA

Literature search

4 open access papers mention mdm-MIR319g
(7 sentences)

Sequence

265102 reads, 27102.0 reads per million, 32 experiments

uaauaguuuucauggagcaguaaauauuguuggaaucauguguauuauguguucuuagagaugguuuaaguGAGCUUUCUUCAGUCCACUCacggaagggcaaaggguuugaauuagcugccgacucauucauucaaacucaguagaaaaggaguggauauuucuacugcgaaugugugaaugaugcgggagauaaauuucauucuuuucuucucugugcUUGGACUGAAGGGAGCUCCCUUuuacuaucuucuuuguuguauacauuguuuaccuaaccauuucuuuucaugauguauuuagugauc
.........((((((((.((.((((...((((((((.((((((((........(..(((((((((..(((.(((((((((((((((((..((((((.(((.((((((..(((((((.((.(((..((((((((.((..(.(((((((((...........))))))))).)..)).))))))))..))).)).)))..)))).))))))))).))))))..))))))))))))))))).)))..)))))).)))..)..)))))))).)))...))))).))))))))))))))..............

Structure

-----uaauaguuu        c  u    auu     ---   c        uauguguu uu   -      uu   u                 CU      a   c      uu    --   g  g   ac        u  aa u         agga 
              ucauggag ag aaau   guugg   aau auguguau        c  aga gauggu  aag GAGCUUUCUUCAGUCCA  Cacgga ggg aaaggg  ugaa  uua cu ccg  ucauucau ca  c caguagaaa    g
              |||||||| || ||||   |||||   ||| ||||||||        |  ||| ||||||  ||| |||||||||||||||||  |||||| ||| ||||||  ||||  ||| || |||  |||||||| ||  | |||||||||    u
              aguacuuu uc uuua   caauc   uug uacauaug        g  ucu cuauca  UUC CUCGAGGGAAGUCAGGU  gugucu uuc uuuucu  acuu  aau ga ggc  aguaagug gu  g gucaucuuu    g
cuagugauuuaugu        -  -    --c     cau   u        ------uu uu   u      uu   C                 Uc      c   -      -u    ua   a  g   gu        u  aa c         auag 

Annotation confidence High

Genome context

MDC011566.500: 5042-5349 [-]

Mature mdm-miR319g-5p

• Accession: MIMAT0043569
• Description: Malus domestica mdm-miR319g-5p mature miRNA
• Sequence: 72 - GAGCUUUCUUCAGUCCACUC - 91
• Evidence: experimental ; Illumina [1]

Mature mdm-miR319g-3p

• Accession: MIMAT0056776
• Description: Malus domestica mdm-miR319g-3p mature miRNA
• Sequence: 221 - UUGGACUGAAGGGAGCUCCCUU - 242
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812