miRBase entry: mdm-MIR10991d

Stem-loop mdm-MIR10991d


Accession
MI0035618
Description
Malus domestica mdm-MIR10991d precursor miRNA


Sequence

6765 reads, 481.0 reads per million, 27 experiments
uuucuuuaggaaccggauccccuucggacccaaaugaacugaguccaaagaucaaaugauuCGAGCCAUUGAAAUUCGAUCCaacggcugcaauuuuuauaacuuuuagaggaccccuuguuuguagucguuggAUCAAAUUUCAAUGACUCGGAUcauuugaugagugggcucaguuucuuuggaucccgaagggaucugguucccauuuuu
........(((((((((((((.((((((.(((((.((((((((((((...(((((((((((((((.((((((((((.((((((((((((((((...............((((...))))..)))))))))))))))).)))))))))).)))))))))))))))...)))))))))))).))))).).)))))))))))))))))).......

Structure
uuucuuua             c     - c     u            aag               C          C                uuuuuauaacuuuua    a 
        ggaaccggauccc uucgg a ccaaa gaacugagucca   aucaaaugauuCGAG CAUUGAAAUU GAUCCaacggcugcaa               gagg  
        ||||||||||||| ||||| | ||||| ||||||||||||   ||||||||||||||| |||||||||| ||||||||||||||||               |||| c
        ccuuggucuaggg aagcc u gguuu uuugacucgggu   uaguuuacUAGGCUC GUAACUUUAA CUAgguugcugauguu               uucc  
-uuuuuac             -     c a     c            gag               A          A                -------------ug    c 


Annotation confidence Medium
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Genome context
MDC007515.264: 1896-2108 [-]

Database links

Mature mdm-miR10991d-5p

Accession MIMAT0043564
Description Malus domestica mdm-miR10991d-5p mature miRNA
Sequence 62 - CGAGCCAUUGAAAUUCGAUCC - 82
Evidence experimental
Illumina [1]

Mature mdm-miR10991d-3p

Accession MIMAT0056771
Description Malus domestica mdm-miR10991d-3p mature miRNA
Sequence 135 - AUCAAAUUUCAAUGACUCGGAU - 156
Evidence experimental
unknown

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812