miRBase entry: mdm-MIR10991b

Stem-loop mdm-MIR10991b


Accession
MI0035616
Description
Malus domestica mdm-MIR10991b precursor miRNA


Sequence

6163 reads, 440.0 reads per million, 27 experiments
ccuusggacccaaaugaayugaguccaaagaucaaaugauyCGAGCCAUUGAAAUUCGAUCCaacggcugcaauuuuuauaacuuuuagaggaccccuuguuuguagucguuggAUCAAAUUUCAAUGACUCGGAUcauuugaugagugggcucaguuucuuuggaucccgaa
.....(((.(((((.(((.((((((((...((((((((((.((((.((((((((((.((((((((((((((((...............((((...))))..)))))))))))))))).)))))))))).)))).))))))))))...)))))))).))).))))).)))....

Structure
ccuus   c     u   y        aag          y    C          C                uuuuuauaacuuuua    a 
     gga ccaaa gaa ugagucca   aucaaaugau CGAG CAUUGAAAUU GAUCCaacggcugcaa               gagg  
     ||| ||||| ||| ||||||||   |||||||||| |||| |||||||||| ||||||||||||||||               |||| c
     ccu gguuu uuu acucgggu   uaguuuacUA GCUC GUAACUUUAA CUAgguugcugauguu               uucc  
-aagc   a     c   g        gag          G    A          A                -------------ug    c 


Annotation confidence Medium
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Genome context
MDC005447.312: 1469-1641 [+]

Database links

Mature mdm-miR10991b-5p

Accession MIMAT0043562
Description Malus domestica mdm-miR10991b-5p mature miRNA
Sequence 42 - CGAGCCAUUGAAAUUCGAUCC - 62
Evidence experimental
Illumina [1]

Mature mdm-miR10991b-3p

Accession MIMAT0056769
Description Malus domestica mdm-miR10991b-3p mature miRNA
Sequence 115 - AUCAAAUUUCAAUGACUCGGAU - 136
Evidence experimental
unknown

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812