miRBase entry: mdm-MIR10991a

Stem-loop mdm-MIR10991a


Accession
MI0035615
Description
Malus domestica mdm-MIR10991a precursor miRNA


Sequence

4521 reads, 336.0 reads per million, 26 experiments
uuucuuuaggaaccggauccccuucggacccaaaugacuugaguccaaagaucaaaugaucCGAGCCAUUGAAAUUCGAUCCaacggcugcaauuuuuauaacuuuuagaggaccccuuguuuguagucguukgAUCAAAUUUCAAUGACUCGGAUcauuugaugagugggcucaguuucuuuggaucccgaagggauccgguucccauuuuu
........(((((((((((((.((((((.(((((.((((.(((((((...(((((((((((((((.((((((((((.((((.(((((((((((...............((((...))))..))))))))))).)))).)))))))))).)))))))))))))))...)))))))))))..))))).).)))))))))))))))))).......

Structure
uuucuuua             c     - c     -u    u       aag               C          C    C           uuuuuauaacuuuua    a 
        ggaaccggauccc uucgg a ccaaa  gacu gagucca   aucaaaugaucCGAG CAUUGAAAUU GAUC aacggcugcaa               gagg  
        ||||||||||||| ||||| | |||||  |||| |||||||   ||||||||||||||| |||||||||| |||| |||||||||||               |||| c
        ccuuggccuaggg aagcc u gguuu  uuga cucgggu   uaguuuacUAGGCUC GUAACUUUAA CUAg uugcugauguu               uucc  
-uuuuuac             -     c a     cu    -       gag               A          A    k           -------------ug    c 


Annotation confidence Medium
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Genome context
MDC018744.152: 1811-2023 [+]

Database links

Mature mdm-miR10991a-5p

Accession MIMAT0043561
Description Malus domestica mdm-miR10991a-5p mature miRNA
Sequence 62 - CGAGCCAUUGAAAUUCGAUCC - 82
Evidence experimental
Illumina [1]

Mature mdm-miR10991a-3p

Accession MIMAT0056768
Description Malus domestica mdm-miR10991a-3p mature miRNA
Sequence 135 - AUCAAAUUUCAAUGACUCGGAU - 156
Evidence experimental
unknown

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812