Stem-loop mdm-MIR10988

Accession

MI0035608

Description

Malus domestica mdm-MIR10988 precursor miRNA

Sequence

uggaaaacgggauacuaacaugaccagaaaccgaugucguuggacuaucgaucacaaucguguguguggauaugucucagagaagggauggaaugauuaagcguuggaaugaauuuccucugacacugccaucagucuuauagacuuauacugaagaggcaugaagaagucuauauaaaacugaugccauugucAGAGAAAAUUCAUUCCAACGCuuaaccauuccaucccuucuuugagacauucacacacaccauugugauugauaauucgacaucgguuucygaucuuguuuguauuccauuuuccaaaga
(((((((.(((((((.((((.((.(.(((((((((((((...((.(((((((((((((.(((((((((((..(((((((((((((((((((((((.((((((((((((((((((((.((((((((.((.(((((((..(((((((((...(((......)).)...)))))))))....))))))).)).)))))))).)))))))))))))))))))).)))))))))))))))))))))))))))))))))).))))))))))))).))))))))))))))).).)).)))).))))))).)))))))....

Structure

----       c       u    u  c a             uug  c             c           ua                       a                    c        c  c       --cu         aua -  aa 
    uggaaaa gggauac aaca ga c gaaaccgaugucg   ga uaucgaucacaau gugugugugga  ugucucagagaagggauggaaug uuaagcguuggaaugaauuu cucugaca ug caucagu    uauagacuu   c ug  g
    ||||||| ||||||| |||| || | |||||||||||||   || ||||||||||||| |||||||||||  ||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||    |||||||||   | ||   
    accuuuu ccuuaug uugu cu g cuuuggcuacagc   uu auaguuaguguua cacacacacuu  acagaguuucuucccuaccuuac aauuCGCAACCUUACUUAAA GAGAcugu ac guaguca    auaucugaa   g ac  a
agaa       a       u    u  a y             ---  a             c           --                       c                    A        u  c       aaau         gaa u  gg 

Annotation confidence Not enough data

Genome context

MDC019830.64: 8505-8818 [-]

Mature mdm-miR10988

• Accession: MIMAT0043554
• Description: Malus domestica mdm-miR10988 mature miRNA
• Sequence: 195 - AGAGAAAAUUCAUUCCAACGC - 215
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812