miRBase entry: mdm-MIR10986

Stem-loop mdm-MIR10986


Accession
MI0035605
Description
Malus domestica mdm-MIR10986 precursor miRNA


Sequence

40654 reads, 1890.0 reads per million, 27 experiments
aacaaarccgggccggccauuuuucauaccuUGGCACCAAAGUCACCACCCGacuguuaukguauucaauucauccuccaacaaguccgugaucucuaugcgcaaucucuuaauuuaugauaaaauuaacaaagaaaugcuaugaaaagaaaguaguuugcggauagagauaacggacuuguuguacgaugagcugaagaugauaacaguCUGGUGGUUACUUUGGUGCCAaggcauacaagauggucaccuuauuuuacu
.........(((..(((((((((..((.(((((((((((((((.((((((.(((((((((.((.((((.((((((...((((((((((((.((((((((.(((((.(((((..(((.(.(((..(((........)))..))).))))..))).)).))))).)))))))).))))))))))))...)))))).)))).)).))))))))).)))))).))))))))))))))).))..))))))))).))).........

Structure
aacaaarcc   cc         uc  a               C      C         k  a    a      cuc            g        g     u  -   aa   a g   aa   aac 
         ggg  ggccauuuu  au ccuUGGCACCAAAGU ACCACC Gacuguuau gu uuca uucauc   caacaaguccgu aucucuau cgcaa cu cuu  uuu u aua  auu   a
         |||  |||||||||  || ||||||||||||||| |||||| ||||||||| || |||| ||||||   |||||||||||| |||||||| ||||| || |||  ||| | |||  |||    
         ucc  cugguagaa  ua ggaACCGUGGUUUCA UGGUGG Cugacaaua ua aagu gaguag   guuguucaggca uagagaua gcguu ga gaa  aaa a uau  uaa   a
ucauuuuau   -a         ca  c               U      U         g  g    c      cau            a        g     u  u   ag   - g   cg   aga 


Annotation confidence Medium
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Genome context
MDC006251.222: 16890-17150 [+]

Database links

Mature mdm-miR10986-5p

Accession MIMAT0043551
Description Malus domestica mdm-miR10986-5p mature miRNA
Sequence 32 - UGGCACCAAAGUCACCACCCG - 52
Evidence experimental
Illumina [1]

Mature mdm-miR10986-3p

Accession MIMAT0056758
Description Malus domestica mdm-miR10986-3p mature miRNA
Sequence 211 - CUGGUGGUUACUUUGGUGCCA - 231
Evidence experimental
unknown

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812