miRBase entry: mdm-MIR10983

Stem-loop mdm-MIR10983


Accession
MI0035601
Description
Malus domestica mdm-MIR10983 precursor miRNA


Sequence

4665 reads, 394.0 reads per million, 26 experiments
gggccauugagaaggaucuccgggcagcagcCUCUUUGCUCAGGCUUCACUGccaugacuguuuugcuuugguuaguuuccaucacuuugaaacuaacCAGAGCAAAACAGUCGUGGAAgugaagccugagcuaagaggccgcuacccggggauccaaaacugcaagu
.............(((((((((((.(((.(((((((.((((((((((((((.((((((((((((((((((((((((((((.........)))))))))))))))))))))))))))).)))))))))))))).))))))).))).)))))))))))............

Structure
gggccauugagaa           c   a       U              G                            cau 
             ggaucuccggg agc gcCUCUU GCUCAGGCUUCACU ccaugacuguuuugcuuugguuaguuuc   c
             ||||||||||| ||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||   a
             ccuaggggccc ucg cggagaa cgaguccgaagugA GGUGCUGACAAAACGAGACcaaucaaag   c
-ugaacgucaaaa           a   c       u              A                            uuu 


Annotation confidence Medium
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Genome context
MDC009740.183: 2169-2336 [+]

Database links

Mature mdm-miR10983-5p

Accession MIMAT0056755
Description Malus domestica mdm-miR10983-5p mature miRNA
Sequence 32 - CUCUUUGCUCAGGCUUCACUG - 52
Evidence experimental
unknown

Mature mdm-miR10983-3p

Accession MIMAT0043546
Description Malus domestica mdm-miR10983-3p mature miRNA
Sequence 99 - CAGAGCAAAACAGUCGUGGAA - 119
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812