Stem-loop mdm-MIR530c

Accession

MI0035599

Description

Malus domestica mdm-MIR530c precursor miRNA

Literature search

1 open access papers mention mdm-MIR530c
(2 sentences)

Sequence

2890 reads, 213.0 reads per million, 32 experiments

acagcgcagaugccaaaauguugcuuuuaucUGCAUUUGCACCUGCACUUGUgcucguucauguuucuuccuuccuugaaaaacccuaaagccaaagcuucagagaauggaaaagguuuuagauauaugagaacaaaaaugacaagaggaaaggaauaagggaaragaaggaaaauggaaaucagaaggaagagcaggaacaagcaagAGGUGCAGGUGCCAGUGCAGGugaaugccauuuugguucauuaaaaaca
........((.(((((((((..((.((((((((((((.((((((((((((.((((.((((.((((.(((((((((((......((((....((....((((...............(((((......))))).............))))...))....)))).....)))))..............)))))))))).)))).))))..)))))))))))).)))))))))))).)))))))))))))..........

Structure

--acagcgca  u         uu  u            U            -G    c    a    u      --------------     gaaaaa    aaag  aaag    agagaauggaaaagg     ga 
          ga gccaaaaug  gc uuuaucUGCAUU GCACCUGCACUU  Ugcu guuc uguu cuuccu              uccuu      cccu    cc    cuuc               uuuua  u
          || |||||||||  || |||||||||||| ||||||||||||  |||| |||| |||| ||||||              |||||      ||||    ||    ||||               |||||   
          cu ugguuuuac  cg aaguGGACGUGA CGUGGACGUGGA  acga caag acga gaagga              aggaa      ggga    gg    ggag               agagu  a
acaaaaauua  -         --  u            C            ga    a    g    -      agacuaaagguaaa     -garaa    auaa  -aaa    --aacaguaaaaaca     au 

Annotation confidence High

Genome context

MDC016706.224: 4106-4362 [+]

Mature mdm-miR530c-5p

• Accession: MIMAT0043544
• Description: Malus domestica mdm-miR530c-5p mature miRNA
• Sequence: 32 - UGCAUUUGCACCUGCACUUGU - 52
• Evidence: experimental ; Illumina [1]

Mature mdm-miR530c-3p

• Accession: MIMAT0056753
• Description: Malus domestica mdm-miR530c-3p mature miRNA
• Sequence: 209 - AGGUGCAGGUGCCAGUGCAGG - 229
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812