Stem-loop mdm-MIR159f

Accession

MI0035596

Description

Malus domestica mdm-MIR159f precursor miRNA

Literature search

11 open access papers mention mdm-MIR159f
(68 sentences)

Sequence

1055663 reads, 75219.0 reads per million, 32 experiments

auguggguaggguuaaggaguggagcuccuugaaguccaaaagaaggugaugcuggguggauagAGCUGCUGAGCUAUGGAUCCCagaguccuauauauccuauaucgcagaucagaucagaugcgaucagaaggaugauaggcuuguggcuugcauaucucaggagcugcauuaccuguacgcugccucuuuuUUUGGAUUGAAGGGAGCUCUAcaccucucucucugucucu
....((((((((...(((.((((((((((((..((((((((((((((((.(((.((((((....((((.(((((.((((.(..(((.((.(((((.((((((..((((((..((......))))))))....))))))))))).)).)))..).)))).))))).))))...)))))))))))).....)))))))))))))..)))))))))))).)))....))))).))).

Structure

augu   -     -uua   a            ga             -----   a   u      auag    G     C    G UC   g  u     a      --au      ga  ag 
    ggg uaggg    agg guggagcuccuu  aguccaaaagaag     gug ugc gggugg    AGCU CUGAG UAUG A  CCa ag ccuau uauccu    aucgca  uc  a
    ||| |||||    ||| ||||||||||||  |||||||||||||     ||| ||| ||||||    |||| ||||| |||| |  ||| || ||||| ||||||    ||||||  ||   
    cuc gucuc    ucc cAUCUCGAGGGA  UUAGGUUUuuuuc     cgc aug uccauu    ucga gacuc auac u  ggu uu ggaua guagga    uagcgu  ag  u
---u   u     ucuc   a            AG             uccgu   -   -      -acg    g     u    g uc   g  c     -      agac      --  ac 

Annotation confidence Low

Genome context

MDC011193.509: 3014-3247 [-]

Mature mdm-miR159f-5p

• Accession: MIMAT0056750
• Description: Malus domestica mdm-miR159f-5p mature miRNA
• Sequence: 65 - AGCUGCUGAGCUAUGGAUCCC - 85
• Evidence: experimental ; unknown

Mature mdm-miR159f-3p

• Accession: MIMAT0043541
• Description: Malus domestica mdm-miR159f-3p mature miRNA
• Sequence: 195 - UUUGGAUUGAAGGGAGCUCUA - 215
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812