Stem-loop mdm-MIR159d

Accession

MI0035594

Description

Malus domestica mdm-MIR159d precursor miRNA

Literature search

11 open access papers mention mdm-MIR159d
(68 sentences)

Sequence

1048368 reads, 74386.0 reads per million, 32 experiments

gguuaaggauugGAGCUCCUUGAAGUCCAAAAGaagguuaugcuggguggauagagcuguugagcuauggaucccacaguacuauuuauccuauguuagaucagaucggaucgaccgaagggaugauaggguuguggcuugcauaucucaggagcugcauuaccuguacgcugccucuuuuUUUGGAUUGAAGGGAGCUCUAcaccucucg
.....(((..(((((((((((..((((((((((((((....(((((((((....((((.(((((.((((.(..((((((..(((((.(((((..(((.((((......)))))))....))))))))))..))))))..).)))).))))).))))...)))))))...))....))))))))))))))..)))))))))))..)))....

Structure

gguua   au           GA              uuau  ---       auag    g     c    g uc      ua     u     --au   a    ag 
     agg  ugGAGCUCCUU  AGUCCAAAAGaagg    gc   ugggugg    agcu uugag uaug a  ccacag  cuauu auccu    guu gauc  a
     |||  |||||||||||  ||||||||||||||    ||   |||||||    |||| ||||| |||| |  ||||||  ||||| |||||    ||| ||||   
     ucc  AUCUCGAGGGA  UUAGGUUUuuuucu    cg   guccauu    ucga gacuc auac u  gguguu  gauag uaggg    cag cuag  u
-gcuc   ac           AG              ccgu  cau       -acg    g     u    g uc      gg     -     aagc   -    gc 

Annotation confidence High

Genome context

MDC001900.112: 17252-17462 [+]

Mature mdm-miR159d-5p

• Accession: MIMAT0056748
• Description: Malus domestica mdm-miR159d-5p mature miRNA
• Sequence: 13 - GAGCUCCUUGAAGUCCAAAAG - 33
• Evidence: experimental ; unknown

Mature mdm-miR159d-3p

• Accession: MIMAT0043539
• Description: Malus domestica mdm-miR159d-3p mature miRNA
• Sequence: 182 - UUUGGAUUGAAGGGAGCUCUA - 202
• Evidence: experimental ; Illumina [1]

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812