miRBase entry: mdm-MIR10982c

Stem-loop mdm-MIR10982c


Accession
MI0035592
Description
Malus domestica mdm-MIR10982c precursor miRNA


Sequence

11220 reads, 939.0 reads per million, 26 experiments
augaggCGGGAAUUCAUCGUAAGCUUCaauugaaugaacuugaggaaauaCGGAAUGAAGCUUACGAGAAUGcucgacuuu
..((((((((.((((.((((((((((((.((.....................)).)))))))))))))))).)))).))))

Structure
au    -    A    A            a  gaaugaacu 
  gagg CGGG AUUC UCGUAAGCUUCa uu         u
  |||| |||| |||| |||||||||||| ||         g
  uuuc gcuc UAAG AGCAUUCGAAGU AG         a
--    a    G    -            A  GCauaaagg 


Annotation confidence Medium
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Genome context
MDC006277.190: 994-1074 [+]

Database links

Mature mdm-miR10982c-5p

Accession MIMAT0056746
Description Malus domestica mdm-miR10982c-5p mature miRNA
Sequence 7 - CGGGAAUUCAUCGUAAGCUUC - 27
Evidence experimental
unknown

Mature mdm-miR10982c-3p

Accession MIMAT0043537
Description Malus domestica mdm-miR10982c-3p mature miRNA
Sequence 51 - CGGAAUGAAGCUUACGAGAAUG - 72
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812