miRBase entry: mdm-MIR10981b

Stem-loop mdm-MIR10981b


Accession
MI0035588
Description
Malus domestica mdm-MIR10981b precursor miRNA


Sequence

3720 reads, 1299.0 reads per million, 28 experiments
uggucaaagucagauuuggauccucuacugagcuuaaggagaggauucuucUGACCAACAUAUAUGGGCCGUuggaugaaaauucaacggcuauaauuauuauaauuuuaaaaugaucuccuguuuauaacuAUUGAAUUUUUAUCCAACGGuccauauauguugguuaggaggauccucuccguuagcucaggagaggauccaaauccgucaaagucg
........(.(.((((((((((((((.(((((((...((((((((((((((((((((((((((((((((((((((((((((((((((.((.(((((............................))))).)).))))))))))))))))))))))))))))))))))))))))))))))))))...))))))).)))))))))))))).).).......

Structure
uggucaaa u a              a       uaa                                                  c  c     uuauuauaauuuu 
        g c gauuuggauccucu cugagcu   ggagaggauucuucUGACCAACAUAUAUGGGCCGUuggaugaaaauucaa gg uauaa             a
        | | |||||||||||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||              
        c g cuaaaccuaggaga gacucga   ccucuccuaggaggauugguuguauauaccuGGCAACCUAUUUUUAAGUU uc auauu             a
-gcugaaa u c              g       uug                                                  A  a     uguccucuaguaa 


Annotation confidence Low
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Genome context
MDC011018.554: 14886-15104 [+]

Database links

Mature mdm-miR10981b-5p

Accession MIMAT0043533
Description Malus domestica mdm-miR10981b-5p mature miRNA
Sequence 52 - UGACCAACAUAUAUGGGCCGU - 72
Evidence experimental
Illumina [1]

Mature mdm-miR10981b-3p

Accession MIMAT0056743
Description Malus domestica mdm-miR10981b-3p mature miRNA
Sequence 133 - AUUGAAUUUUUAUCCAACGG - 152
Evidence experimental
unknown

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812