miRBase entry: mdm-MIR10981a

Stem-loop mdm-MIR10981a


Accession
MI0035587
Description
Malus domestica mdm-MIR10981a precursor miRNA


Sequence

13293 reads, 1228.0 reads per million, 30 experiments
ucuauaaaaugggauuuggauccucuccugagcuuaaggagacgauccuccUGACCAACAUAUAUGGGCCGUuggagccguuggauuuucauccaacggcuacaaaaauggagucucuuuaaaguuauaauaauuAUAGCCGUUGGAUUUUCAUCcaacgauccauauauauuggucaggaggauccucuccuuaagcucaggagaggauccaaauccuauaaaaugc
........((((((((((((((((((((((((((((((((((.(((((((((((((((.((((((((((((((..(((((((((((....))))))))))).....)))))............(((((((...)))))))((((((((....)))))))).))))))))).))))))))))))))).)))))))))))))))))))))))))))))))))).......

Structure
ucuauaaa                                  c               C         CCGUuggagccguuggauuuucauccaacggcuacaaaaauggagucucuuuaaaguuauaauaauuAUAGC        U 
        augggauuuggauccucuccugagcuuaaggaga gauccuccUGACCAA AUAUAUGGG                                                                        CGUUGGAU U
        |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||                                                                        ||||||||  
        uauccuaaaccuaggagaggacucgaauuccucu cuaggaggacugguu uauauaccu                                                                        gcaacCUA U
-cguaaaa                                  c               a         -----------------------------------------------------------------------a        C 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
MDC000839.489: 2465-2692 [+]

Database links

Mature mdm-miR10981a-5p

Accession MIMAT0043532
Description Malus domestica mdm-miR10981a-5p mature miRNA
Sequence 52 - UGACCAACAUAUAUGGGCCGU - 72
Evidence experimental
Illumina [1]

Mature mdm-miR10981a-3p

Accession MIMAT0056742
Description Malus domestica mdm-miR10981a-3p mature miRNA
Sequence 136 - AUAGCCGUUGGAUUUUCAUC - 155
Evidence experimental
unknown

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812