miRBase entry: mdm-MIR10980a

Stem-loop mdm-MIR10980a


Accession
MI0035585
Description
Malus domestica mdm-MIR10980a precursor miRNA


Sequence

2032 reads, 268.0 reads per million, 30 experiments
aagaugcuuaagucucuggguggaacucccaCACCUGGGACUUGCAGCCAUGuuucccuuaagcaauagggacgggaugcacgagaugcagcaguuggaaacauggcugcaagucucaggugugggaguuccACCCAGAGACUGGAACACCA
..........(((((((((((((((((((((((((((((((((((((((((((((((((((.....))))(((....((((.....))))...))))))))))))))))))))))))))))))))))))))))))))))))))((....)).

Structure
aagaugcuua                                               cuuaagcaauagggacgg 
          agucucuggguggaacucccaCACCUGGGACUUGCAGCCAUGuuucc                  g
          |||||||||||||||||||||||||||||||||||||||||||||||                  a
          UCAGAGACCCAccuugaggguguggacucugaacgucgguacaaagg                  u
-ACCACAAGG                                               uugacgacguagagcacg 


Annotation confidence Low
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Genome context
MDC009540.166: 985-1136 [+]

Database links

Mature mdm-miR10980a-5p

Accession MIMAT0043530
Description Malus domestica mdm-miR10980a-5p mature miRNA
Sequence 32 - CACCUGGGACUUGCAGCCAUG - 52
Evidence experimental
Illumina [1]

Mature mdm-miR10980a-3p

Accession MIMAT0056740
Description Malus domestica mdm-miR10980a-3p mature miRNA
Sequence 133 - ACCCAGAGACUGGAACACCA - 152
Evidence experimental
unknown

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812