miRBase entry: ppe-MIR3627

Stem-loop ppe-MIR3627


Accession
MI0026152
Description
Prunus persica ppe-MIR3627 precursor miRNA

Literature search
2 open access papers mention ppe-MIR3627
(18 sentences)

Sequence

aaguugagggauuuauguUCGCAGGAGAGAUGGCACUGUCuguggugcaacuagcuaccagcagaUGGUGUCAUCCCUCCUGUGACCagaaaacccuauaacuu
((((((((((.(((.((.(((((((((.((((((((((((((((((((.....)).)))).)))))))))))))).))))))))).)).))).)))).))))))

Structure
      -    a   a  u         A              -    -  a 
aaguug aggg uuu ug UCGCAGGAG GAUGGCACUGUCug uggu gc a
|||||| |||| ||| || ||||||||| |||||||||||||| |||| || c
uucaau uccc aaa aC AGUGUCCUC CUACUGUGGUagac acca cg u
      a    a   g  C         C              g    u  a 


Annotation confidence Not enough data
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Genome context
chrG3: 25329223-25329326 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppe-MIR3627
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR3627-5p

Accession MIMAT0031534
Description Prunus persica ppe-miR3627-5p mature miRNA
Sequence 19 - UCGCAGGAGAGAUGGCACUGUC - 40
Evidence experimental
Illumina [1]

Mature ppe-miR3627-3p

Accession MIMAT0031535
Description Prunus persica ppe-miR3627-3p mature miRNA
Sequence 66 - UGGUGUCAUCCCUCCUGUGACC - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149