Stem-loop ppe-MIR395d

Accession

MI0026106

Description

Prunus persica ppe-MIR395d precursor miRNA

Literature search

4 open access papers mention ppe-MIR395d
(15 sentences)

Sequence

auccgugguaauguacuuauuguagaagcugugaugaaaaaagaggaaauauugucaggugucaccgagaguucucuugaccacuucauugggaaauaauucauucugaucaauuauauaucccaCUGAAGUGUUUGGGGGAACUCcugguggcauuugauuuuacaaagaauaacaaagcucuuacaagcuuuccacauauccaccgccauggau
(((((((((...((......(((.(((((((((........((((........((((((((((((((.((((((((((((.(((((((.(((((.((((((.((....)).))))))...))))).))))))).)))))))))))).))))))))))))))...................))))))).))))))..))).....)).)))))))))

Structure

         aau  acuuau   -a      -   augaaaaa    -----------gaaauauu              a            c       u     --a      c  u 
auccguggu   gu      ugu  gaagcu gug        agag                   gucaggugucaccg gaguucucuuga cacuuca uggga   auaauu au c
|||||||||   ||      |||  |||||| |||        ||||                   |||||||||||||| |||||||||||| ||||||| |||||   |||||| ||  
uagguaccg   ca      aca  uuucga cau        ucuc                   uaguuuacgguggu CUCAAGGGGGUU GUGAAGU acccu   uauuaa ua u
         --c  -ccuau   cc      a   --------    gaaacaauaagaaacauuu              c            U       C     aua      c  g 

Annotation confidence Low

Genome context

chrG1: 27764041-27764256 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from ppe-MIR395d

Mature ppe-miR395d

• Accession: MIMAT0031482
• Description: Prunus persica ppe-miR395d mature miRNA
• Sequence: 126 - CUGAAGUGUUUGGGGGAACUC - 146
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149