miRBase entry: mtr-MIR7700

Stem-loop mtr-MIR7700


Accession
MI0025229
Description
Medicago truncatula mtr-MIR7700 precursor miRNA


Sequence

13212 reads, 147.0 reads per million, 111 experiments
aggaaucagagcuuuuagguucuuuuaaUAAGGAAAAUAUUUUGAAUGAcccugucauuuuuaaacaaguggaggguggggaaggcugugccccacgcgccugucuuggagguggagugugggacagcuugcaaguugcuggcaggggagcagcacgcgucccacgcgccaguuuuauuauggggccuguugcuuuuaaggcccauugcucugggguggaucagcaguguuguuugggugauagggggugcagaaucaaucagaggaccuccuuucuucaaauauugggaguuuucaugaugaaggccugggaguggguucaaauguugaggaggggcuuauagcgcaugguuauucuguggugguggugguggggugggggguugcaacucaaccaacauauucgauucuuucggaagagucggauauuucggaauauagugacuccguugaugacuuugugggggaugagcagaaaaucuuauccuaauugguucauacucuuccgaaaggaaucgaauauguugguugaguugcaaccccccaccccaccaccaccaccacagaauaaccaugcgcuauaagccccuccucaacauuugaacccacucccaggccuucaucaugaaaacucccaauauuugaagaaagGAGGUCCUCUGAUUGAUUCUGcacccccuaucacccaaacaacacugcugauccaccccauagcaaugggccuuaaaagcaacaggccccauaauaaaacuggcgcgugggacgcgugcugcuccccugccagcaacuugcaagcugucccacacuccaccuccaagacaggcgcguggggcacagccuuccccacacuccacuuguuuaaaaaugacagggucauucaaaauauuuuccuuauuaaaagaaccuaaaa
.............(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((....(((........))).))))...((((((......((((((((........))))))))....)).)))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).

Structure
aggaaucagagcu                                                             g                                                                                                                                       c                                                                                                                                                                                                       -            cggauauuucggaauauagugacuccguug    -  uugugg        cag 
             uuuagguucuuuuaaUAAGGAAAAUAUUUUGAAUGAcccugucauuuuuaaacaaguggag guggggaaggcugugccccacgcgccugucuuggagguggagugugggacagcuugcaaguugcuggcaggggagcagcacgcgucccacgcgccaguuuuauuauggggccuguugcuuuuaaggcccauugcu ugggguggaucagcaguguuguuugggugauagggggugcagaaucaaucagaggaccuccuuucuucaaauauugggaguuuucaugaugaaggccugggaguggguucaaauguugaggaggggcuuauagcgcaugguuauucuguggugguggugguggggugggggguugcaacucaaccaacauauucgauuc uuucggaagagu                              auga cu      gggaugag   a
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||                              |||| ||      ||||||||    
             aaauccaagaaaauuauuccuuuuauaaaacuuacugggacaguaaaaauuuguucaccuc caccccuuccgacacggggugcgcggacagaaccuccaccucacacccugucgaacguucaacgaccguccccucgucgugcgcagggugcgcggucaaaauaauaccccggacaacgaaaauuccggguaacga accccaccuagucgucacaacaaacccacuaucccccacGUCUUAGUUAGUCUCCUGGAGgaaagaaguuuauaacccucaaaaguacuacuuccggacccucacccaaguuuacaacuccuccccgaauaucgcguaccaauaagacaccaccaccaccaccccaccccccaacguugaguugguuguauaagcuaag aaagccuucuca                              uacu gg      uccuauuc   a
------------a                                                             a                                                                                                                                       u                                                                                                                                                                                                       g            ------------------------------    u  --uuaa        uaa 


Annotation confidence Low
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Genome context
chr3: 26045881-26046790 [+]

Database links

Mature mtr-miR7700-5p

Accession MIMAT0030000
Description Medicago truncatula mtr-miR7700-5p mature miRNA
Sequence 29 - UAAGGAAAAUAUUUUGAAUGA - 49
Evidence experimental
Illumina [1]

Mature mtr-miR7700-3p

Accession MIMAT0055281
Description Medicago truncatula mtr-miR7700-3p mature miRNA
Sequence 652 - GAGGUCCUCUGAUUGAUUCUG - 672
Evidence experimental
unknown

References

  1. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105