Stem-loop mtr-MIR7696d

Accession

MI0025225

Description

Medicago truncatula mtr-MIR7696d precursor miRNA

Literature search

1 open access papers mention mtr-MIR7696d
(2 sentences)

Sequence

219925 reads, 1916.0 reads per million, 111 experiments

ugCUUCAAGUUCUCAUAAUUCAAaacgaaaaguuuauggaaguuuuucaaauguaacuuaucuuuUUGAAUUAUGAGAACUUGAAGca
(((((((((((((((((((((((((.((.((((((((.(((....)))..))).))))).)).)))))))))))))))))))))))))

Structure

                         c  a     -   -g   g 
ugCUUCAAGUUCUCAUAAUUCAAaa ga aaguu uau  gaa u
||||||||||||||||||||||||| || ||||| |||  |||  
acGAAGUUCAAGAGUAUUAAGUUuu cu uucaa gua  cuu u
                         u  a     u   aa   u 

Annotation confidence High

Genome context

AC225474.24: 39292-39379 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from mtr-MIR7696d

Mature mtr-miR7696d-5p

• Accession: MIMAT0029992
• Description: Medicago truncatula mtr-miR7696d-5p mature miRNA
• Sequence: 3 - CUUCAAGUUCUCAUAAUUCAA - 23
• Evidence: experimental ; Illumina [1]

Mature mtr-miR7696d-3p

• Accession: MIMAT0029993
• Description: Medicago truncatula mtr-miR7696d-3p mature miRNA
• Sequence: 66 - UUGAAUUAUGAGAACUUGAAG - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105