Stem-loop mtr-MIR397

Accession

MI0025221

Description

Medicago truncatula mtr-MIR397 precursor miRNA

Literature search

10 open access papers mention mtr-MIR397
(38 sentences)

Sequence

2351 reads, 20.0 reads per million, 108 experiments

uuggagaaacaucAUUGAGUGCAGCGUUGAUGAAaucuuauguagcaucuagcuaucuuauagauaucaaauauugcaugcuuaauuuCAUCUACGCUACACUCAAUUAuguuuuuuuaa
.(((((((((((.((((((((.(((((.((((((((..((.((((((......(((((...)))))........))).))).)))))))))).))))).)))))))).))))))))))).

Structure

u           c        C     U        cu  u   -   --ucuagc     u 
 uggagaaacau AUUGAGUG AGCGU GAUGAAau  ua gua gca        uaucu  
 ||||||||||| |||||||| ||||| ||||||||  || ||| |||        ||||| a
 auuuuuuuguA UAACUCAC UCGCA CUACuuua  au cgu cgu        auaga  
a           U        A     U        --  u   a   uauaaacu     u 

Annotation confidence High

Genome context

contig_103871: 626-745 [-]

Mature mtr-miR397-5p

• Accession: MIMAT0029984
• Description: Medicago truncatula mtr-miR397-5p mature miRNA
• Sequence: 14 - AUUGAGUGCAGCGUUGAUGAA - 34
• Evidence: experimental ; Illumina [1]

Mature mtr-miR397-3p

• Accession: MIMAT0029985
• Description: Medicago truncatula mtr-miR397-3p mature miRNA
• Sequence: 89 - CAUCUACGCUACACUCAAUUA - 109
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105