Stem-loop mtr-MIR319c

Accession

MI0025219

Description

Medicago truncatula mtr-MIR319c precursor miRNA

Literature search

9 open access papers mention mtr-MIR319c
(20 sentences)

Sequence

16786400 reads, 100676.0 reads per million, 111 experiments

cagaaaugggAGUUCCUUGCAGCCCAAAGCGCCAagugagaauucuacuggcaaauuauguuUUGGACUGAAGGGAGCUCCCAGuucuu
.((((.((((((((((((.(((.(((((((((((.((((....)).)))))).......))))))).))).)))))))))))).)))).

Structure

c    a            G   C       -------    a  -  g 
 agaa ugggAGUUCCUU CAG CCAAAGC       GCCA gu ga a
 |||| |||||||||||| ||| |||||||       |||| || ||  
 ucuu ACCCUCGAGGGA GUC GGUUuug       cggu ca cu a
u    G            A   A       uauuaaa    -  u  u 

Annotation confidence Medium

Genome context

contig_50311: 658-746 [+]

Mature mtr-miR319c-5p

• Accession: MIMAT0029980
• Description: Medicago truncatula mtr-miR319c-5p mature miRNA
• Sequence: 11 - AGUUCCUUGCAGCCCAAAGCGCCA - 34
• Evidence: experimental ; Illumina [1]

Mature mtr-miR319c-3p

• Accession: MIMAT0029981
• Description: Medicago truncatula mtr-miR319c-3p mature miRNA
• Sequence: 63 - UUGGACUGAAGGGAGCUCCCAG - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105