Stem-loop mdm-MIR319b

Accession

MI0023072

Description

Malus domestica mdm-MIR319b precursor miRNA

Literature search

4 open access papers mention mdm-MIR319b
(7 sentences)

Sequence

264827 reads, 26525.0 reads per million, 31 experiments

gcaguggugaagAGAGCUUUCUUCAGUCCACUcauggguggcgguaggauuuaauuagcugccgagucauucauccaaauacuggguuauuaguaggaugacauccaguaaaugugugaaugaagcgggagacaaauuggaucuuaagcuuccuguacUUGGACUGAAGGGAGCUCCCUUaauuaauuacuuc
..((((((.(((.(((((((((((((((((...(((((.(((..((((((((((((.(((.(((..((((((((.((..((((((((((((.....))))))..))))))..)).))))))))..))).)).).)))))))))))).))).)))))...))))))))))))))))).))).....))))))..

Structure

gc      ----g   A                 CUc     u   gg            a -  g   ag        c  aa      --      a 
  aguggu     aag GAGCUUUCUUCAGUCCA   auggg ggc  uaggauuuaauu g cu ccg  ucauucau ca  uacugg  guuauu g
  ||||||     ||| |||||||||||||||||   ||||| |||  |||||||||||| | || |||  |||||||| ||  ||||||  |||||| u
  ucauua     UUC CUCGAGGGAAGUCAGGU   ugucc ucg  auucuagguuaa c ga ggc  aguaagug gu  augacc  caguag a
cu      auuaa   C                 Uca     u   -a            a a  g   ga        u  aa      ua      g 

Annotation confidence High

Genome context

MDC008903.290: 17094-17286 [+]

Mature mdm-miR319b-5p

• Accession: MIMAT0037468
• Description: Malus domestica mdm-miR319b-5p mature miRNA
• Sequence: 13 - AGAGCUUUCUUCAGUCCACU - 32
• Evidence: experimental ; Illumina [2]

Mature mdm-miR319b-3p

• Accession: MIMAT0025968
• Description: Malus domestica mdm-miR319b-3p mature miRNA
• Sequence: 159 - UUGGACUGAAGGGAGCUCCCUU - 180
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47


2. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812