Stem-loop bmo-mir-6497

Accession

MI0022087

Description

Bombyx mori bmo-mir-6497 precursor miRNA

Literature search

1 open access papers mention bmo-mir-6497
(12 sentences)

Sequence

2706102 reads, 57540.0 reads per million, 34 experiments

ggauccguaacuucGGAAUAAGGAUUGGCUCUGAGGACCggggcgugucggguuuggacgggaagcggaugcggccggugccggguCUGGUCGAUGUUCGUGCGuuauguucg
.((..((((((....(((((..((((((.((((.(.(((((..((((((.(.(((......))).).)))))).))))).))))).))))))..)))))....)))))).)).

Structure

g  uc      uucG     AG      C    A G     gg      g g   gg 
 ga  cguaac    GAAUA  GAUUGG UCUG G ACCgg  cguguc g uuu  a
 ||  ||||||    |||||  |||||| |||| | |||||  |||||| | |||   
 cu  guauuG    CUUGU  CUGGUC gggc c uggcc  gcguag c aag  c
g  -u      CGUG     AG      u    - g     -g      g g   gg 

Annotation confidence Low

Genome context

dbj|BSVE01000011.1|: 4506258-4506370 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bmo-mir-6497

Mature bmo-miR-6497-5p

• Accession: MIMAT0025321
• Description: Bombyx mori bmo-miR-6497-5p mature miRNA
• Sequence: 15 - GGAAUAAGGAUUGGCUCUGAGGACC - 39
• Evidence: experimental ; SOLiD [1]

Mature bmo-miR-6497-3p

• Accession: MIMAT0025322
• Description: Bombyx mori bmo-miR-6497-3p mature miRNA
• Sequence: 87 - CUGGUCGAUGUUCGUGCG - 104
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 22662121
   Transposable-element associated small RNAs in Bombyx mori genome
   Cai Y, Zhou Q, Yu C, Wang X, Hu S, Yu J, Yu X
   PLoS One (2012) 7:e36599