Stem-loop pgi-MIR6142

Accession

MI0021316

Description

Panax ginseng pgi-MIR6142 precursor miRNA

Literature search

1 open access papers mention pgi-MIR6142
(1 sentences)

Sequence

guacacagucgacuaugaaGACGAUUUUUUGGGCUAUGACGACgguuucaacuguagucauagcuauucuagaucugggcuacggcgggcuaugacgaugggugaaccgucccauagcgcaaaaaaucaaucgccauagcccaacuguguau
(((((((((.(.(((((..((.(((((((((.((((((..(((((((.((.((((.(((((((((...(((....)))((....)).))))))))).)))).))))))))).)))))).)))))))))..))..))))))...)))))))))

Structure

         --c a     aa  -C         G      AC       u  a    a         ------auu   g 
guacacagu   g cuaug  GA  GAUUUUUUG GCUAUG  GACgguu ca cugu gucauagcu         cua a
|||||||||   | |||||  ||  ||||||||| ||||||  ||||||| || |||| |||||||||         |||  
uauguguca   c gauac  cu  cuaaaaaac cgauac  cugccaa gu ggua caguaucgg         ggu u
         acc -     cg  aa         g      -c       -  g    g         gcggcaucg   c 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6142

• Accession: MIMAT0027266
• Description: Panax ginseng pgi-miR6142 mature miRNA
• Sequence: 20 - GACGAUUUUUUGGGCUAUGACGAC - 43
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385