Stem-loop pgi-MIR6141

Accession

MI0021315

Description

Panax ginseng pgi-MIR6141 precursor miRNA

Literature search

1 open access papers mention pgi-MIR6141
(3 sentences)

Sequence

aauucucucggaacaauuccgaauuuacaacucaucaauugauaauucaaugguucugacucccauugcgugcgagcccaauUAACUAAAUCUGGCCUGUAGCGGAccagcuuaaaggaauuuuuuccauuuuuggaucugugauugauccuacggauucuagaauuuucuauagguauaauccguaguaucaaucacagauucaaaaaauggcuucuaggcugguccgnuauuggucauauuuaguaauuggucuccacguaaugggagccagaaccauuggauugaccaauugaugaguuguaaauucgaauuuguuccgagagaauu
((((((((((((((((...((((((((((((((((((((((.((((((((((((((((.(((((((((((((.(((.(((((((.((((((.(((((.(((.((((((((((((.(((........(((((((((((((((((((((((.((((((((((((..........))))....)))))))).))))))))))))))).))))))))))).)))))))))))).))).))))).))))))))))))).)))))))))))))))).))))))))))))))))..))))))))))))))))))))))...))))))))))))))))

Structure

                uuc                      -a                a             c   c       A      C     U   G            a   aauuuuuu        -               c        ----    gaau 
aauucucucggaacaa   cgaauuuacaacucaucaauug  uaauucaaugguucug cucccauugcgug gag ccaauUA CUAAAU UGGCC GUA CGGAccagcuua agg        ccauuuuu ggaucugugauugau cuacggau    ucua    u
||||||||||||||||   ||||||||||||||||||||||  |||||||||||||||| ||||||||||||| ||| ||||||| |||||| ||||| ||| |||||||||||| |||        |||||||| ||||||||||||||| ||||||||    ||||     
uuaagagagccuuguu   gcuuaaauguugaguaguuaac  guuagguuaccaagac gaggguaaugcac cuc gguuaau gauuua acugg uau gccuggucggau uuc        gguaaaaa cuuagacacuaacua gaugccua    ggau    u
                uaa                      ca                c             -   u       -      u     u   n            c   --------        a               u        auau    aucu 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6141

• Accession: MIMAT0027265
• Description: Panax ginseng pgi-miR6141 mature miRNA
• Sequence: 83 - UAACUAAAUCUGGCCUGUAGCGGA - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385