Stem-loop pgi-MIR6138

Accession

MI0021309

Description

Panax ginseng pgi-MIR6138 precursor miRNA

Literature search

1 open access papers mention pgi-MIR6138
(4 sentences)

Sequence

guUACGUUUGGAUUGAAGGAAUGAAAuggaauggaaugaagagaugaaugauuuguuccauuucagucagaaugagucauuccauacccucccccaaguaauaaaauucauaauuuggaaggaaugagaaugauucauuccauuccaauagaacaaccaaacacaaauuuuuuuucucauuccauucccucguucacuccaccgauccaaacguagc
(((((((((((((((..(((.((((..((((((((((((.((((.((((...((((((.(((..(((..((((((((((((((((..(((...((((((.............)))))).))).))).))))))))))))).)))..))).))))))..........)))).)))).))))))))))))....)))).)))..)))))))))))))))

Structure

               AA   A    --Au            a    u    -------gau      c   uc   ca             -   ac   ccc      aauaa 
guUACGUUUGGAUUG  GGA UGAA    ggaauggaauga gaga gaau          uuguuc auu  agu  gaaugagucauuc cau  ccu   ccaagu     a
|||||||||||||||  ||| ||||    |||||||||||| |||| ||||          |||||| |||  |||  ||||||||||||| |||  |||   ||||||     a
cgaugcaaaccuagc  ccu acuu    ccuuaccuuacu uuuu uuua          aacaag uaa  uua  cuuacuuaguaag gua  gga   gguuua     u
               ca   c    gcuc            c    u    aacacaaacc      a   cc   -c             a   -a   --a      auacu 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6138

• Accession: MIMAT0027259
• Description: Panax ginseng pgi-miR6138 mature miRNA
• Sequence: 3 - UACGUUUGGAUUGAAGGAAUGAAA - 26
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385