Stem-loop pgi-MIR6135k

Accession

MI0021306

Description

Panax ginseng pgi-MIR6135k precursor miRNA

Literature search

1 open access papers mention pgi-MIR6135k
(5 sentences)

Sequence

uacggaucugguuauuaugaaguuaauuucaugauaaguuggucaauugaccaauauaguguugacaugcagacaaagagauuacuuucugucugCGUGUCGAUACUGUAUUGGUuaauuaaucaaaguuaacuucaugcuaaucauuuccgug
((((((..((((((.((((((((((((((..........((((.(((((((((((((((((((((((((((((((.((((....)))).))))))))))))))))))))))))))))))).)))))))))))))))))).))))))..))))))

Structure

      uc      u              caugauaagu    c                               a    a 
uacgga  ugguua uaugaaguuaauuu          uggu aauugaccaauauaguguugacaugcagaca agag u
||||||  |||||| ||||||||||||||          |||| ||||||||||||||||||||||||||||||| ||||  
gugccu  acuaau guacuucaauugaa          acua uuaauUGGUUAUGUCAUAGCUGUGCgucugu uuuc u
      uu      c              ----------    a                               c    a 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6135k

• Accession: MIMAT0027256
• Description: Panax ginseng pgi-miR6135k mature miRNA
• Sequence: 96 - CGUGUCGAUACUGUAUUGGU - 115
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385