Stem-loop pgi-MIR6135e

Accession

MI0021297

Description

Panax ginseng pgi-MIR6135e precursor miRNA

Literature search

1 open access papers mention pgi-MIR6135e
(12 sentences)

Sequence

augggaagugguuagcaugaaguuuauuuuGGGUAAGUUGGUCAAUUGACUAAUAGAAUACUGACACgcaggcgaguucuauguguguaguauuuauuggcucaauugaccaacuuacaaaaaaauaacuucaugcuaaccggaucccau
((((((..((((((((((((((((..((((..(((((((((((((((((((((((((.(((((.((((((...........))))))))))))))))))).)))))))))))))))))..))))..))))))))))))))))..))))))

Structure

      ag                ua    GG                 -        A     A      ggcg 
auggga  ugguuagcaugaaguu  uuuu  GUAAGUUGGUCAAUUGA CUAAUAGA UACUG CACgca    a
||||||  ||||||||||||||||  ||||  ||||||||||||||||| |||||||| ||||| ||||||    g
uacccu  gccaaucguacuucaa  aaaa  cauucaaccaguuaacu gguuauuu augau gugugu    u
      ag                ua    aa                 c        -     -      aucu 

Annotation confidence Not enough data

Genome context

Unknown

Mature pgi-miR6135e-5p

• Accession: MIMAT0027245
• Description: Panax ginseng pgi-miR6135e-5p mature miRNA
• Sequence: 31 - GGGUAAGUUGGUCAAUUGAC - 50
• Evidence: experimental ; Illumina [1]

Mature pgi-miR6135e.2-5p

• Accession: MIMAT0027246
• Description: Panax ginseng pgi-miR6135e.2-5p mature miRNA
• Sequence: 44 - AAUUGACUAAUAGAAUACUGACAC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22962612
   High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng
   Wu B, Wang M, Ma Y, Yuan L, Lu S
   PLoS One (2012) 7:e44385