Stem-loop cel-mir-5551

Accession

MI0019072

Description

Caenorhabditis elegans cel-mir-5551 precursor miRNA

Sequence

4408 reads, 25 reads per million, 16 experiments

uuaauuauuuuuggaguggagcUGUAAAUGGUUGGAAUCUGGUAUaauggcuucgagacuuuuuauACCAAUUUCUUACCAUUAGCAUCuacacuuucaaaucuaaauc
....(((..(((((((((.((.(((.((((((.((((..((((((((.((((...)).))..))))))))..)))).)))))).))).)).))).))))))..)))...

Structure

uuaa   uu      -   g  c   A      U    UC        -u  -  u 
    uua  uuugga gug ag UGU AAUGGU GGAA  UGGUAUaa  gg cu  
    |||  |||||| ||| || ||| |||||| ||||  ||||||||  || || c
    aau  aaacuu cac uC ACG UUACCA UCUU  ACCAuauu  uc ga  
-cua   cu      u   a  U   A      U    UA        uu  a  g 

Annotation confidence Not enough data

Genome context

chrIV: 9757508-9757616 [+]

Mature cel-miR-5551-5p

• Accession: MIMAT0022193
• Description: Caenorhabditis elegans cel-miR-5551-5p mature miRNA
• Sequence: 23 - UGUAAAUGGUUGGAAUCUGGUAU - 45
• Evidence: experimental ; Illumina [1]

Mature cel-miR-5551-3p

• Accession: MIMAT0022194
• Description: Caenorhabditis elegans cel-miR-5551-3p mature miRNA
• Sequence: 67 - ACCAAUUUCUUACCAUUAGCAUC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21810936
   Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans
   "Kato M, Chen X, Inukai S, Zhao H, Slack FJ"
   "RNA (2011) 17:1804-1820