Stem-loop cel-mir-5550

Accession

MI0019071

Description

Caenorhabditis elegans cel-mir-5550 precursor miRNA

Sequence

333 reads, 2 reads per million, 12 experiments

ugacacuccaccguuucuaaaCCCCGCCCAAGAUUUCAUUUGCacugaaaugugucggccgcagugCAAAUGAAAUCGUGGGCGGGucucagaaacagcggagugucguug
.((((((((.(.((((((....((((((((.((((((((((((((((....((....))..)))))))))))))))).))))))))....)))))).).))))))))....

Structure

---u        a c      aaaC        A                aaau  g 
    gacacucc c guuucu    CCCGCCCA GAUUUCAUUUGCacug    gu u
    |||||||| | ||||||    |||||||| ||||||||||||||||    ||  
    cugugagg g caaaga    GGGCGGGU CUAAAGUAAACgugac    cg c
guug        c a      cucu        G                --gc  g 

Annotation confidence Not enough data

Genome context

chrIV: 409762-409872 [+]

Mature cel-miR-5550-5p

• Accession: MIMAT0022191
• Description: Caenorhabditis elegans cel-miR-5550-5p mature miRNA
• Sequence: 22 - CCCCGCCCAAGAUUUCAUUUGC - 43
• Evidence: experimental ; Illumina [1]

Mature cel-miR-5550-3p

• Accession: MIMAT0022192
• Description: Caenorhabditis elegans cel-miR-5550-3p mature miRNA
• Sequence: 67 - CAAAUGAAAUCGUGGGCGGG - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21810936
   Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans
   "Kato M, Chen X, Inukai S, Zhao H, Slack FJ"
   "RNA (2011) 17:1804-1820