Stem-loop cel-mir-5549

Accession

MI0019070

Description

Caenorhabditis elegans cel-mir-5549 precursor miRNA

Sequence

3402 reads, 15 reads per million, 14 experiments

acgagagggggagagauuuuuuugggcCUUGUGAAAUUAACGUGAGUuuucuggucaucugacuaaUCAUGUUGGUUUUUUGUUGGUuuauuuuguuuuuaucuuuguuu
..((.(((((.((((((.....((((((....(((((((((((((......(((((....))))).))))))))))))).....))))))....)))))).))))).)).

Structure

ac  g     g      uuuuu      -UUGU             GUuuuc     a 
  ga agggg agagau     ugggcC     GAAAUUAACGUGA      ugguc u
  || ||||| ||||||     ||||||     |||||||||||||      |||||  
  uu uuucu uuuuug     auuUGG     UUUUGGUUGUACU      aucag c
-u  g     a      -uuuu      UUGUU             -----a     u 

Annotation confidence High

Genome context

chrIII: 6971976-6972085 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-5549

Mature cel-miR-5549-5p

• Accession: MIMAT0022189
• Description: Caenorhabditis elegans cel-miR-5549-5p mature miRNA
• Sequence: 28 - CUUGUGAAAUUAACGUGAGU - 47
• Evidence: experimental ; Illumina [1]

Mature cel-miR-5549-3p

• Accession: MIMAT0022190
• Description: Caenorhabditis elegans cel-miR-5549-3p mature miRNA
• Sequence: 67 - UCAUGUUGGUUUUUUGUUGGU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21810936
   Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans
   "Kato M, Chen X, Inukai S, Zhao H, Slack FJ"
   "RNA (2011) 17:1804-1820