Stem-loop cel-mir-5547

Accession

MI0019068

Description

Caenorhabditis elegans cel-mir-5547 precursor miRNA

Sequence

922 reads, 10.0 reads per million, 70 experiments

cugcggaauuuuguugauugagaCAACUUUUAGACCAAUAGGCAUCcaaaaaugaucaaaauuggaUGCCUAUCGGCCUAAAAGUUGUCucaaucaacgaaugagauaaa
.........((((((((((((((((((((((((.((.((((((((((((............)))))))))))).)).)))))))))))))))))))))))).........

Structure

cugcggaau                        A  A            aaaug 
         uuuguugauugagaCAACUUUUAG CC AUAGGCAUCcaa     a
         |||||||||||||||||||||||| || ||||||||||||      
         aagcaacuaacuCUGUUGAAAAUC GG UAUCCGUagguu     u
aaauagagu                        C  C            aaaac 

Annotation confidence Medium

Genome context

chrII: 12238602-12238711 [+]

Mature cel-miR-5547-5p

• Accession: MIMAT0022185
• Description: Caenorhabditis elegans cel-miR-5547-5p mature miRNA
• Sequence: 24 - CAACUUUUAGACCAAUAGGCAUC - 46
• Evidence: experimental ; Illumina [1]

Mature cel-miR-5547-3p

• Accession: MIMAT0022186
• Description: Caenorhabditis elegans cel-miR-5547-3p mature miRNA
• Sequence: 67 - UGCCUAUCGGCCUAAAAGUUGUC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21810936
   Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans
   "Kato M, Chen X, Inukai S, Zhao H, Slack FJ"
   "RNA (2011) 17:1804-1820