Stem-loop cel-mir-5546

Accession

MI0019067

Description

Caenorhabditis elegans cel-mir-5546 precursor miRNA

Sequence

414 reads, 4 reads per million, 12 experiments

agcuaaauaauugcauuuucgcaACCCUUUCGCCAAUUUUUUUCGUgaaaaaacguguaauuuuacGAAAAAUUGCGCGCAUGGGUUGcgaaaacgcauuaaccgcacgg
.((....((((.((.((((((((((((...((((((((((..((((((((..........))))))))))))))).)))...)))))))))))).))))))...))....

Structure

---a  uaaa    u  a            UUU   -       UU        aaac 
    gc    uaau gc uuuucgcaACCC   CGC CAAUUUU  UCGUgaaa    g
    ||    |||| || ||||||||||||   ||| |||||||  ||||||||     
    cg    auua cg aaaagcGUUGGG   GCG GUUAAAA  AGcauuuu    u
ggca  -cca    -  c            UAC   C       --        aaug 

Annotation confidence Not enough data

Genome context

chrI: 2888448-2888557 [-]

Mature cel-miR-5546-5p

• Accession: MIMAT0022183
• Description: Caenorhabditis elegans cel-miR-5546-5p mature miRNA
• Sequence: 24 - ACCCUUUCGCCAAUUUUUUUCGU - 46
• Evidence: experimental ; Illumina [1]

Mature cel-miR-5546-3p

• Accession: MIMAT0022184
• Description: Caenorhabditis elegans cel-miR-5546-3p mature miRNA
• Sequence: 67 - GAAAAAUUGCGCGCAUGGGUUG - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21810936
   Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans
   "Kato M, Chen X, Inukai S, Zhao H, Slack FJ"
   "RNA (2011) 17:1804-1820