Stem-loop aau-MIR168

Accession

MI0018985

Description

Acacia auriculiformis aau-MIR168 precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

1 open access papers mention aau-MIR168
(3 sentences)

Sequence

cuccgAUUCAGUUGAUGCAAGGCGGGAUCcgauucaacgccgguaaggaaaccguccauuucgcgccauccggcgcggugguggaagcagaaccgguucccgaccugcaccaagcgaauuagagacc
(((.(((((..(((.((((.(((((((.(((.(((...((((((......))))(((((((((((((....))))))).)))))).)).))).))).))))).)))))).)))..))))).)))...

Structure

---   c     AG   A    A  -     U   a   aac  cgguaaggaaaccg      -       a 
   cuc gAUUC  UUG UGCA GG CGGGA Ccg uuc   gc              uccauu ucgcgcc u
   ||| |||||  ||| |||| || ||||| ||| |||   ||              |||||| |||||||  
   gag uuaag  aac acgu cc gcccu ggc aag   cg              aggugg ggcgcgg c
cca   a     cg   c    -  a     u   c   --a  -------------a      u       c 

Annotation confidence Not enough data

Genome context

Unknown

Mature aau-miR168

• Accession: MIMAT0022678
• Description: Acacia auriculiformis aau-miR168 mature miRNA
• Sequence: 6 - AUUCAGUUGAUGCAAGGCGGGAUC - 29
• Evidence: not_experimental

References

1. PubMed ID: 21729267
   Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
   Wong MM, Cannon CH, Wickneswari R
   BMC Genomics (2011) 12:342